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The AmoyDx® HANDLE Breast Cancer NGS Panel is a next-generation sequencing (NGS)-based assay designed for the qualitative detection of single nucleotide variants (SNVs) and insertions and deletions (InDels) in the targeted regions of five genes : AKT1,  ERBB2, ESR1,  PIK3CA, and  PTEN. N. The assay is compatible with DNA extracted from formalin-fixed, paraffin-embedded (FFPE) breast cancer tissue samples, as well as circulating cell-free DNA (cfDNA) isolated from plasma derived from anti-coagulated peripheral whole blood samples from individuals with breast cancer.
 



White Paper


1. Validation of the AmoyDx® HANDLE Breast Cancer NGS Panel in FFPE and Liquid Biopsy Samples

The AmoyDx® HANDLE Breast Cancer NGS Panel enables efficient testing of both plasma and FFPE samples. Its proprietary HANDLE technology supports a simple, streamlined workflow with a turnaround time of 4 working days.
Analytical validation demonstrated high accuracy, sensitivity, and precision, with consistent performance across operators and batches. The Seraseq® ESR1 reference series further confirmed analytical sensitivity and specificity.
Overall, the panel provides a rapid, sensitive, and reproducible solution for breast cancer testing across both tissue and liquid biopsy. By integrating key actionable targets in a single assay, it supports timely, evidence-based molecular findings.

Mutations( Hover over each mutational type to highlight genes covered )

All
SNV/INDELS
AKT1

AKT1

SNV/INDELS
ERBB2

ERBB2

SNV/INDELS
ESR1

ESR1

SNV/INDELS
PTEN

PTEN

SNV/INDELS
PIK3CA

PIK3CA

SNV/INDELS

Highly Sensitive with LOD as low as 0.2% VAF from plasma cfDNA

Highly Sensitive with LOD as low as 0.2% VAF from plasma cfDNA

Fast turnaround time in 4 days

Fast turnaround time in 4 days

Optimized HANDLE Workflow

Optimized HANDLE Workflow

Cost- effective

Cost- effective

Specifications

Sample Type
plasma cfDNA, FFPE tissue
Kit format
24 tests/kit
Sequencers
Illumina NextSeq 500, NextSeq 550, NextSeq 550Dx, Salus Pro

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